MARC details
000 -LEADER |
fixed length control field |
11726cam a2200445 a 4500 |
001 - CONTROL NUMBER |
control field |
7905376 |
003 - CONTROL NUMBER IDENTIFIER |
control field |
OSt |
005 - DATE AND TIME OF LATEST TRANSACTION |
control field |
20120907124301.0 |
008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION |
fixed length control field |
100104s2010 njuaf b 001 0 eng |
010 ## - LIBRARY OF CONGRESS CONTROL NUMBER |
LC control number |
2009052129 |
015 ## - NATIONAL BIBLIOGRAPHY NUMBER |
National bibliography number |
GBB001925 |
Source |
bnb |
016 7# - NATIONAL BIBLIOGRAPHIC AGENCY CONTROL NUMBER |
Record control number |
015455186 |
Source |
Uk |
020 ## - INTERNATIONAL STANDARD BOOK NUMBER |
International Standard Book Number |
9780470163733 (cloth) |
020 ## - INTERNATIONAL STANDARD BOOK NUMBER |
International Standard Book Number |
0470163739 (cloth) |
035 ## - SYSTEM CONTROL NUMBER |
System control number |
(OCoLC)ocn460048996 |
035 ## - SYSTEM CONTROL NUMBER |
System control number |
(OCoLC)460048996 |
035 ## - SYSTEM CONTROL NUMBER |
System control number |
(NNC)7905376 |
040 ## - CATALOGING SOURCE |
Original cataloging agency |
DLC |
Transcribing agency |
DLC |
Modifying agency |
BTCTA |
-- |
YDXCP |
-- |
C#P |
-- |
BWX |
-- |
UKM |
-- |
NNC-M |
-- |
OrLoB-B |
050 00 - LIBRARY OF CONGRESS CALL NUMBER |
Classification number |
QH441.2 |
Item number |
.D98 2010 |
082 00 - DEWEY DECIMAL CLASSIFICATION NUMBER |
Classification number |
572.86/DZI |
Edition number |
22 |
100 1# - MAIN ENTRY--PERSONAL NAME |
Personal name |
Dziuda, Darius M. |
245 10 - TITLE STATEMENT |
Title |
Data mining for genomics and proteomics : |
Remainder of title |
analysis of gene and protein expression data |
Statement of responsibility, etc |
Darius M. Dzuida. |
260 ## - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) |
Place of publication, distribution, etc |
Hoboken, N.J. : |
Name of publisher, distributor, etc |
Wiley, |
Date of publication, distribution, etc |
c2010. |
300 ## - PHYSICAL DESCRIPTION |
Extent |
xvii, 319 p., [8] p. of plates : |
Other physical details |
ill. (some col.) ; |
Dimensions |
25 cm. |
490 1# - SERIES STATEMENT |
Series statement |
Wiley series on methods and applications in data mining |
504 ## - BIBLIOGRAPHY, ETC. NOTE |
Bibliography, etc |
Includes bibliographical references and index. |
505 00 - FORMATTED CONTENTS NOTE |
Miscellaneous information |
1. |
Title |
Introduction -- |
Miscellaneous information |
1.1. |
Title |
Basic Terminology -- |
Miscellaneous information |
1.1.1. |
Title |
The Central Dogma of Molecular Biology -- |
Miscellaneous information |
1.1.2. |
Title |
Genome -- |
Miscellaneous information |
1.1.3. |
Title |
Proteome -- |
Miscellaneous information |
1.1.4. |
Title |
DNA (Deoxyribonucleic Acid) -- |
Miscellaneous information |
1.1.5. |
Title |
RNA (Ribonucleic Acid) -- |
Miscellaneous information |
1.1.6. |
Title |
mRNA (messenger RNA) -- |
Miscellaneous information |
1.1.7. |
Title |
Genetic Code -- |
Miscellaneous information |
1.1.8. |
Title |
Gene -- |
Miscellaneous information |
1.1.9. |
Title |
Gene Expression and the Gene Expression Level -- |
Miscellaneous information |
1.1.10. |
Title |
Protein -- |
Miscellaneous information |
1.2. |
Title |
Overlapping Areas of Research -- |
Miscellaneous information |
1.2.1. |
Title |
Genomics -- |
Miscellaneous information |
1.2.2. |
Title |
Proteomics -- |
Miscellaneous information |
1.2.3. |
Title |
Bioinformatics -- |
Miscellaneous information |
1.2.4. |
Title |
Transcriptomics and Other-omics -- |
Miscellaneous information |
1.2.5. |
Title |
Data Mining -- |
Miscellaneous information |
2. |
Title |
Basic Analysis Of Gene Expression Microarray Data -- |
Miscellaneous information |
2.1. |
Title |
Introduction -- |
Miscellaneous information |
2.2. |
Title |
Microarray Technology -- |
Miscellaneous information |
2.2.1. |
Title |
Spotted Microarrays -- |
Miscellaneous information |
2.2.2. |
Title |
Affymetrix GeneChip ® Microarrays -- |
Miscellaneous information |
2.2.3. |
Title |
Bead-Based Microarrays -- |
Miscellaneous information |
2.3. |
Title |
Low-Level Preprocessing of Affymetrix Microarrays -- |
Miscellaneous information |
2.3.1. |
Title |
MASS -- |
Miscellaneous information |
2.3.2. |
Title |
RMA -- |
Miscellaneous information |
2.3.3. |
Title |
GCRMA -- |
Miscellaneous information |
2.3.4. |
Title |
PLIER -- |
Miscellaneous information |
2.4. |
Title |
Public Repositories of Microarray Data -- |
Miscellaneous information |
2.4.1. |
Title |
Microarray Gene Expression Data Society (MGED) Standards -- |
Miscellaneous information |
2.4.2. |
Title |
Public Databases -- |
Miscellaneous information |
2.4.2.1. |
Title |
Gene Expression Omnibus (GEO) -- |
Miscellaneous information |
2.4.2.2. |
Title |
ArrayExpress -- |
Miscellaneous information |
2.5. |
Title |
Gene Expression Matrix -- |
Miscellaneous information |
2.5.1. |
Title |
Elements of Gene Expression Microarray Data Analysis -- |
Miscellaneous information |
2.6. |
Title |
Additional Preprocessing, Quality Assessment, and Filtering -- |
Miscellaneous information |
2.6.1. |
Title |
Quality Assessment -- |
Miscellaneous information |
2.6.2. |
Title |
Filtering -- |
Miscellaneous information |
2.7. |
Title |
Basic Exploratory Data Analysis -- |
Miscellaneous information |
2.7.1. |
Title |
t Test -- |
Miscellaneous information |
2.7.1.1. |
Title |
t Test for Equal Variances -- |
Miscellaneous information |
2.7.1.2. |
Title |
t Test for Unequal Variances -- |
Miscellaneous information |
2.7.2. |
Title |
ANOVA F Test -- |
Miscellaneous information |
2.7.3. |
Title |
SAM t Statistic -- |
Miscellaneous information |
2.7.4. |
Title |
Limma -- |
Miscellaneous information |
2.7.5. |
Title |
Adjustment for Multiple Comparisons -- |
Miscellaneous information |
2.7.5.1. |
Title |
Single-Step Bonferroni Procedure -- |
Miscellaneous information |
2.7.5.2. |
Title |
Single-Step Sidak Procedure -- |
Miscellaneous information |
2.7.5.3. |
Title |
Step-Down Holm Procedure -- |
Miscellaneous information |
2.7.5.4. |
Title |
Step-Up Benjamini and Hochberg Procedure -- |
Miscellaneous information |
2.7.5.5. |
Title |
Permutation Based Multiplicity Adjustment -- |
Miscellaneous information |
2.8. |
Title |
Unsupervised Learning (Taxonomy-Related Analysis) -- |
Miscellaneous information |
2.8.1. |
Title |
Cluster Analysis -- |
Miscellaneous information |
2.8.1.1. |
Title |
Measures of Similarity or Distance -- |
Miscellaneous information |
2.8.1.2. |
Title |
k-Means Clustering -- |
Miscellaneous information |
2.8.1.3. |
Title |
Hierarchical Clustering -- |
Miscellaneous information |
2.8.1.4. |
Title |
Two-Way Clustering and Related Methods -- |
Miscellaneous information |
2.8.2. |
Title |
Principal Component Analysis -- |
Miscellaneous information |
2.8.3. |
Title |
Self-Organizing Maps -- |
-- |
Exercises -- |
Miscellaneous information |
3. |
Title |
Biomarker Discovery and Classification -- |
Miscellaneous information |
3.1. |
Title |
Overview -- |
Miscellaneous information |
3.1.1. |
Title |
Gene Expression Matrix...Again -- |
Miscellaneous information |
3.1.2. |
Title |
Biomarker Discovery -- |
Miscellaneous information |
3.1.3. |
Title |
Classification Systems -- |
Miscellaneous information |
3.1.3.1. |
Title |
Parametric and Nonparametric Learning Algorithms -- |
Miscellaneous information |
3.1.3.2. |
Title |
Terms Associated with Common Assumptions Underlying Parametric Learning Algorithms -- |
Miscellaneous information |
3.1.3.3. |
Title |
Visualization of Classification Results -- |
Miscellaneous information |
3.1.4. |
Title |
Validation of the Classification Model -- |
Miscellaneous information |
3.1.4.1. |
Title |
Reclassification -- |
Miscellaneous information |
3.1.4.2. |
Title |
Leave-One-Out and K-Fold Cross-Validation -- |
Miscellaneous information |
3.1.4.3. |
Title |
External and Internal Cross-Validation -- |
Miscellaneous information |
3.1.4.4. |
Title |
Holdout Method of Validation -- |
Miscellaneous information |
3.1.4.5. |
Title |
Ensemble-Based Validation (Using Out-of-Bag Samples) -- |
Miscellaneous information |
3.1.4.6. |
Title |
Validation on an Independent Data Set -- |
Miscellaneous information |
3.1.5. |
Title |
Reporting Validation Results -- |
Miscellaneous information |
3.1.5.1. |
Title |
Binary Classifiers -- |
Miscellaneous information |
3.1.5.2. |
Title |
Multiclass Classifiers -- |
Miscellaneous information |
3.1.6. |
Title |
Identifying Biological Processes Underlying the Class Differentiation -- |
Miscellaneous information |
3.2. |
Title |
Feature Selection -- |
Miscellaneous information |
3.2.1. |
Title |
Introduction -- |
Miscellaneous information |
3.2.2. |
Title |
Univariate Versus Multivariate Approaches -- |
Miscellaneous information |
3.2.3. |
Title |
Supervised Versus Unsupervised Methods -- |
Miscellaneous information |
3.2.4. |
Title |
Taxonomy of Feature Selection Methods -- |
Miscellaneous information |
3.2.4.1. |
Title |
Filters, Wrappers, Hybrid, and Embedded Models -- |
Miscellaneous information |
3.2.4.2. |
Title |
Strategy: Exhaustive, Complete, Sequential, Random, and Hybrid Searches -- |
Miscellaneous information |
3.2.4.3. |
Title |
Subset Evaluation Criteria -- |
Miscellaneous information |
3.2.4.4. |
Title |
Search-Stopping Criteria -- |
Miscellaneous information |
3.2.5. |
Title |
Feature Selection for Multiclass Discrimination -- |
Miscellaneous information |
3.2.6. |
Title |
Regularization and Feature Selection -- |
Miscellaneous information |
3.2.7. |
Title |
Stability of Biomarkers -- |
Miscellaneous information |
3.3. |
Title |
Discriminant Analysis -- |
Miscellaneous information |
3.3.1. |
Title |
Introduction -- |
Miscellaneous information |
3.3.2. |
Title |
Learning Algorithm -- |
Miscellaneous information |
3.3.3. |
Title |
A Stepwise Hybrid Feature Selection with T2 -- |
Miscellaneous information |
3.4. |
Title |
Support Vector Machines -- |
Miscellaneous information |
3.4.1. |
Title |
Hard-Margin Support Vector Machines -- |
Miscellaneous information |
3.4.2. |
Title |
Soft-Margin Support Vector Machines -- |
Miscellaneous information |
3.4.3. |
Title |
Kernels -- |
Miscellaneous information |
3.4.4. |
Title |
SVMs and Multiclass Discrimination -- |
Miscellaneous information |
3.4.4.1. |
Title |
One-Versus-the-Rest Approach -- |
Miscellaneous information |
3.4.4.2. |
Title |
Pairwise Approach -- |
Miscellaneous information |
3.4.4.3. |
Title |
All-Classes-Simultaneously Approach -- |
Miscellaneous information |
3.4.5. |
Title |
SVMs and Feature Selection: Recursive Feature Elimination -- |
Miscellaneous information |
3.4.6. |
Title |
Summary -- |
Miscellaneous information |
3.5. |
Title |
Random Forests -- |
Miscellaneous information |
3.5.1. |
Title |
Introduction -- |
Miscellaneous information |
3.5.2. |
Title |
Random Forests Learning Algorithm -- |
Miscellaneous information |
3.5.3. |
Title |
Random Forests and Feature Selection -- |
Miscellaneous information |
3.5.4. |
Title |
Summary -- |
Miscellaneous information |
3.6. |
Title |
Ensemble Classifiers, Bootstrap Methods, and The Modified Bagging Schema -- |
Miscellaneous information |
3.6.1. |
Title |
Ensemble Classifiers -- |
Miscellaneous information |
3.6.1.1. |
Title |
Parallel Approach -- |
Miscellaneous information |
3.6.1.2. |
Title |
Serial Approach -- |
Miscellaneous information |
3.6.1.3. |
Title |
Ensemble Classifiers and Biomarker Discovery -- |
Miscellaneous information |
3.6.2. |
Title |
Bootstrap Methods -- |
Miscellaneous information |
3.6.3. |
Title |
Bootstrap and Linear Discriminant Analysis -- |
Miscellaneous information |
3.6.4. |
Title |
The Modified Bagging Schema -- |
Miscellaneous information |
3.7. |
Title |
Other Learning Algorithms -- |
Miscellaneous information |
3.7.1. |
Title |
k-Nearest Neighbor Classifiers -- |
Miscellaneous information |
3.7.2. |
Title |
Artificial Neural Networks -- |
Miscellaneous information |
3.7.2.1. |
Title |
Perceptron -- |
Miscellaneous information |
3.7.2.2. |
Title |
Multilayer Feedforward Neural Networks -- |
Miscellaneous information |
3.7.2.3. |
Title |
Training the Network (Supervised Learning) -- |
Miscellaneous information |
3.8. |
Title |
Eight Commandments of Gene Expression Analysis (for Biomarker Discovery) -- |
-- |
Exercises -- |
Miscellaneous information |
4. |
Title |
The Informative Set of Genes -- |
Miscellaneous information |
4.1. |
Title |
Introduction -- |
Miscellaneous information |
4.2. |
Title |
Definitions -- |
Miscellaneous information |
4.3. |
Title |
The Method -- |
Miscellaneous information |
4.3.1. |
Title |
Identification of the Informative Set of Genes -- |
Miscellaneous information |
4.3.2. |
Title |
Primary Expression Patterns of the informative Set of Genes -- |
Miscellaneous information |
4.3.3. |
Title |
The Most Frequently Used Genes of the Primary Expression Patterns -- |
Miscellaneous information |
4.4. |
Title |
Using the Informative Set of Genes to Identify Robust Multivariate Biomarkers -- |
Miscellaneous information |
4.5. |
Title |
Summary -- |
-- |
Exercises -- |
Miscellaneous information |
5. |
Title |
Analysis of Protein Expression Data -- |
Miscellaneous information |
5.1. |
Title |
Introduction -- |
Miscellaneous information |
5.2. |
Title |
Protein Chip Technology -- |
Miscellaneous information |
5.2.1. |
Title |
Antibody Microarrays -- |
Miscellaneous information |
5.2.2. |
Title |
Peptide Microarrays -- |
Miscellaneous information |
5.2.3. |
Title |
Protein Microarrays -- |
Miscellaneous information |
5.2.4. |
Title |
Reverse Phase Microarrays -- |
Miscellaneous information |
5.3. |
Title |
Two-Dimensional Gel Electrophoresis -- |
Miscellaneous information |
5.4. |
Title |
MALDI-TOF and SELDI-TOF Mass Spectrometry -- |
Miscellaneous information |
5.4.1. |
Title |
MALDI-TOF Mass Spectrometry -- |
Miscellaneous information |
5.4.2. |
Title |
SELDI-TOF Mass Spectrometry -- |
Miscellaneous information |
5.5. |
Title |
Preprocessing of Mass Spectrometry Data -- |
Miscellaneous information |
5.5.1. |
Title |
Introduction -- |
Miscellaneous information |
5.5.2. |
Title |
Elements of Preprocessing of SELDI-TOF Mass Spectrometry Data -- |
Miscellaneous information |
5.5.2.1. |
Title |
Quality Assessment -- |
Miscellaneous information |
5.5.2.2. |
Title |
Calibration -- |
Miscellaneous information |
5.5.2.3. |
Title |
Baseline Correction -- |
Miscellaneous information |
5.5.2.4. |
Title |
Noise Reduction and Smoothing -- |
Miscellaneous information |
5.5.2.5. |
Title |
Peak Detection -- |
Miscellaneous information |
5.5.2.6. |
Title |
Intensity Normalization -- |
Miscellaneous information |
5.5.2.7. |
Title |
Peak Alignment Across Spectra -- |
Miscellaneous information |
5.6. |
Title |
Analysis of Protein Expression Data -- |
Miscellaneous information |
5.6.1. |
Title |
Additional Preprocessing -- |
Miscellaneous information |
5.6.2. |
Title |
Basic Exploratory Data Analysis -- |
Miscellaneous information |
5.6.3. |
Title |
Unsupervised Learning -- |
Miscellaneous information |
5.6.4. |
Title |
Supervised Learning---Feature Selection and Biomarker Discovery -- |
Miscellaneous information |
5.6.5. |
Title |
Supervised Learning---Classification Systems -- |
Miscellaneous information |
5.7. |
Title |
Associating Biomarker Peaks with Proteins -- |
Miscellaneous information |
5.7.1. |
Title |
Introduction -- |
Miscellaneous information |
5.7.2. |
Title |
The Universal Protein Resource (UniProt) -- |
Miscellaneous information |
5.7.3. |
Title |
Search Programs -- |
Miscellaneous information |
5.7.4. |
Title |
Tandem Mass Spectrometry -- |
Miscellaneous information |
5.8. |
Title |
Summary -- |
Miscellaneous information |
6. |
Title |
Sketches for Selected Exercises -- |
Miscellaneous information |
6.1. |
Title |
Introduction -- |
Miscellaneous information |
6.2. |
Title |
Multiclass Discrimination (Exercise 3.2) -- |
Miscellaneous information |
6.2.1. |
Title |
Data Set Selection, Downloading, and Consolidation -- |
Miscellaneous information |
6.2.2. |
Title |
Filtering Probe Sets -- |
Miscellaneous information |
6.2.3. |
Title |
Designing a Multistage Classification Schema -- |
Miscellaneous information |
6.3. |
Title |
Identifying the Informative Set of Genes (Exercises 4.2-4.6) -- |
Miscellaneous information |
6.3.1. |
Title |
The Informative Set of Genes -- |
Miscellaneous information |
6.3.2. |
Title |
Primary Expression Patterns of the Informative Set -- |
Miscellaneous information |
6.3.3. |
Title |
The Most Frequently Used Genes of the Primary Expression Patterns -- |
Miscellaneous information |
6.4. |
Title |
Using the Informative Set of Genes to Identify Robust Multivariate Markers (Exercise 4.8) -- |
Miscellaneous information |
6.5. |
Title |
Validating Biomarkers on an Independent Test Data Set (Exercise 4.8) -- |
Miscellaneous information |
6.6. |
Title |
Using a Training Set that Combines More than One Data Set (Exercises 3.5 and 4.1-4.8) -- |
Miscellaneous information |
6.6.1. |
Title |
Combining the Two Data Sets into a Single Training Set -- |
Miscellaneous information |
6.6.2. |
Title |
Filtering Probe Sets of the Combined Data -- |
Miscellaneous information |
6.6.3. |
Title |
Assessing the Discriminatory Power of the Biomarkers and Their Generalization -- |
Miscellaneous information |
6.6.4. |
Title |
Identifying the Informative Set of Genes -- |
505 80 - FORMATTED CONTENTS NOTE |
Miscellaneous information |
6.6.5. |
Title |
Primary Expression Patterns of the Informative Set of Genes -- |
Miscellaneous information |
6.6.6. |
Title |
The Most Frequently Used Genes of the Primary Expression Patterns -- |
Miscellaneous information |
6.6.7. |
Title |
Using the Informative Set of Genes to Identify Robust Multivariate Markers -- |
Miscellaneous information |
6.6.8. |
Title |
Validating Biomarkers on an Independent Test Data Set. |
520 1# - SUMMARY, ETC. |
Summary, etc |
"Proper analysis and mining of the rapidly growing amount of available genomic and proteomic data is vital for advances in biomedical research. Data Mining for Genomics and Proteomics describes efficient methods for analysis of gene and protein expression data. Dr. Darius Dziuda demonstrates step by step how biomedical studies can and should be performed to maximize the chance of extracting new and useful biomedical knowledge from available data. Readers receive clear guidance on when to use particular data mining methods and why, along with the reasons why some popular approaches can lead to inferior results." "This book covers all aspects of gene and protein expression analysis---from technology, data preprocessing, quality assessment, and basic exploratory analysis to unsupervised and supervised learning algorithms, feature selection, and biomarker discovery. Also presented is a novel method for identification of the Informative Set of Genes, defined as a set containing all information significant for the differentiation of classes represented in training data. Special attention is given to multivariate biomarker discovery leading to parsimonious and generalizable classifiers. In addition, exercises and examples of hands-on analysis of real-world gene expression data sets give readers an opportunity to put the methods they have learned to practical use." "Data Mining for Genomics and Proteomics is an excellent resource for data mining specialists, bioinformaricians, computational biologists, biomedical scientists, computer scientists, molecular biologists, and life scientists. It is also ideal for upper-level undergraduate and graduate-level students of bioinformatics, data mining, computational biology, and biomedical sciences, as well as anyone interested in efficient methods of knowledge discovery based on high-dimensional data."--BOOK JACKET. |
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM |
Topical term or geographic name as entry element |
Genomics |
General subdivision |
Data processing. |
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM |
Topical term or geographic name as entry element |
Proteomics |
General subdivision |
Data processing. |
650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM |
Topical term or geographic name as entry element |
Data mining. |
650 12 - SUBJECT ADDED ENTRY--TOPICAL TERM |
Topical term or geographic name as entry element |
Genomics. |
650 22 - SUBJECT ADDED ENTRY--TOPICAL TERM |
Topical term or geographic name as entry element |
Proteomics. |
650 22 - SUBJECT ADDED ENTRY--TOPICAL TERM |
Topical term or geographic name as entry element |
Data Mining. |
650 22 - SUBJECT ADDED ENTRY--TOPICAL TERM |
Topical term or geographic name as entry element |
Automatic Data Processing. |
830 #0 - SERIES ADDED ENTRY--UNIFORM TITLE |
Uniform title |
Wiley series on methods and applications in data mining. |
900 ## - EQUIVALENCE OR CROSS-REFERENCE-PERSONAL NAME [LOCAL, CANADA] |
Numeration |
TOC |
942 ## - ADDED ENTRY ELEMENTS (KOHA) |
Source of classification or shelving scheme |
|
Koha item type |
Books |